Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs62477484 chr7:62061129 G/T 6.44E-7 365 23.83 20.23 11.27 KM Plot
CRC rs62477508 chr7:62093180 G/C 3.59E-5 369 24.47 19.87 17.47 KM Plot
CRC rs62477533 chr7:62120294 G/A 6.75E-8 369 24.33 19.93 10.22 KM Plot
CRC rs62478750 chr7:61990277 T/C 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs62479160 chr7:62135044 G/A 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs6424587 chr1:74823561 A/T 3.2E-8 374 1.63 22.4 22.33 KM Plot
CRC rs6450304 chr5:54666154 A/G 5.17E-5 373 22.32 23.43 9.67 KM Plot
CRC rs6557584 chr7:57710049 T/C 1.96E-6 371 11.92 20.58 23.3 KM Plot
CRC rs6581255 chr12:59969968 C/A 1.04E-5 374 10.4 18.13 24.77 KM Plot
CRC rs6581256 chr12:59970132 A/T 1.04E-5 374 10.4 18.13 24.77 KM Plot
CRC rs6581260 chr12:59970595 C/T 5.63E-5 374 11.58 18.53 24.93 KM Plot
CRC rs6581261 chr12:59970631 C/A 5.63E-5 374 11.58 18.53 24.93 KM Plot
CRC rs661988 chr11:68189251 T/G 1.86E-5 360 22.67 22.3 14.23 KM Plot
CRC rs67899281 chr7:62037163 C/T 7.79E-7 364 23.1 20.23 11.27 KM Plot
CRC rs6805321 chr3:195734981 A/G 0 374 22.4 19.62 1.63 KM Plot